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Extract any MCMC model objects that were stored with the model

Source: R/metab_bayes.R
get_mcmc.Rd

A function specific to metab_bayes models. Returns the fitted object from the selected Stan interface: a stanfit (rstan::stanfit) for RStan or a CmdStanMCMC (cmdstanr::CmdStanMCMC) for CmdStanR. The object is saved in the metab_model by default because you should almost always inspect it; see the keep_mcmcs argument to specs() for options for saving space. See the interface documentation for available summaries, diagnostics, draws, and plotting methods.

Usage

get_mcmc(metab_model)

# S3 method for class 'metab_bayes'
get_mcmc(metab_model)

Arguments

metab_model

A Bayesian metabolism model (metab_bayes) from which to return the MCMC model object(s).

Value

The MCMC model object(s).

Methods (by class)

  • get_mcmc(metab_bayes): Get the Bayesian MCMC model object

Examples

mm <- metab_model("metab_bayes", mcmc = list(chain = 1))
get_mcmc(mm)
#> $chain
#> [1] 1
#>